Zhang Lab

Zhang Lab

Fudan University

Publications

2024

  1. Yuan, L., Pan, L.#, Wang, Y. … Goel,J.#, Zhang, Z.#, & Cheng X.# Characterization of the landscape of the intratumoral microbiota reveals that Streptococcus anginosus increases the risk of gastric cancer initiation and progression. Cell Discovery, 2024, 10(1): 117.
  2. Qian, S., Zhang, C., Tang, Y., Dai, M., He, Z., Ma, H., Wang, L., Yang, Q., Liu, Y., Xu, W., Zhang, Z.#, Tang., QQ#. A single-cell sequence analysis of mouse subcutaneous white adipose tissue reveals dynamic changes during weaning. Communications Biology, 2024, 7(1): 787.
  3. Zhang, Z., Liu, G., Zhou, Z., Su, Z., Gu, X., Global level of methylation in the sea lamprey (jawless vertebrate) genome is intermediate between invertebrate and jawed vertebrate genomes. JEZ-B: Molecular and Developmental Evolution, 2024.

2023

  1. Zhang, Z.#, Gao, Q., Ren, X., Luo, M., Liu, Y., Liu, P., … & Han, L#. (2023). Characterization of intratumor microbiome in cancer immunotherapy. The Innovation, 4(5).
  2. Wang, Y., Hong, Q., Xia, Y., Zhang, Z.#, & Wen, B#. (2023). The Lysine Demethylase KDM7A Regulates Immediate Early Genes in Neurons. Advanced Science, 10(28), 2301367.
  3. Dong, Y., Gao, Q., Chen, Y., Zhang, Z., Du, Y., Liu, Y., … & Ye, Y#. (2023). Identification of CircRNA signature associated with tumor immune infiltration to predict therapeutic efficacy of immunotherapy. Nature Communications, 14(1), 2540.

2022

  1. Wang, Y., Zhang, C., Wang, Y., Liu, X., & Zhang, Z#. (2022). Enhancer RNA (eRNA) in Human Diseases. International Journal of Molecular Sciences, 23(19), 11582.
  2. Zhang, Z.#, Luo, M., Li, Q., Liu, Y., Lussier, C., Zhang, J., … & Han, L.# (2022). Genetic, pharmacogenomic, and immune landscapes of enhancer RNAs across human cancers. Cancer Research, 82(5), 785-790.
  3. Jin, W., Jiang, G., Yang, Y., Yang, J., Yang, W., Wang, D., … Zhang, Z.# & Gong, J.# (2022). Animal-eRNAdb: a comprehensive animal enhancer RNA database. Nucleic Acids Research, 50(D1), D46-D53.

2021

  1. Zhang, Z., & Han, L. (2021). Circular RNAs sequenced at last. Nature Biotechnology, 39(7), 811-812.
  2. Shao, K., Pu, W., Zhang, J., Guo, S., Qian, F., Glurich, I., … Zhang, Z.# & Ding, W.# (2021). DNA hypermethylation contributes to colorectal cancer metastasis by regulating the binding of CEBPB and TFCP2 to the CPEB1 promoter. Clinical epigenetics, 13(1), 89.
  3. Zhang, Z.#, Zhang, J., Diao, L., & Han, L. (2021). Small non-coding RNAs in human cancer: Function, clinical utility, and characterization. Oncogene, 40(9), 1570-1577.
  4. Li, Y., Tan, Z., Zhang, Y., Zhang, Z., Hu, Q., Liang, K., … & Yang, L. (2021). A noncoding RNA modulator potentiates phenylalanine metabolism in mice. Science, 373(6555), 662-673.
  5. Zhang, Z.#, Hong, W., Ruan, H., Jing, Y., Li, S., Liu, Y., … & Han, L. (2021). HeRA: An atlas of enhancer RNAs across human tissues. Nucleic acids research, 49(D1), D932-D938.
  6. Shen, S., Zhang, Z., & He, F. (2021). The phylogenetic relationship within SARS-CoV-2s: An expanding basal clade. Molecular Phylogenetics and Evolution, 157, 107017.

2020

  1. Zhang, Z., Jing, J., Ye, Y., Chen, Z., Jing, Y., Li, S., … & Han, L. (2020). Characterization of the dual functional effects of heat shock proteins (HSPs) in cancer hallmarks to aid development of HSP inhibitors. Genome medicine, 12, 1-16.
  2. Li, S., Zhang, Z., & Han, L. (2020). 3D spheroids propel tumor characterization. Trends in Cancer, 6(8), 622-624.
  3. Ye, Y., Zhang, Z., Liu, Y., Diao, L., & Han, L. (2020). A multi-omics perspective of quantitative trait loci in precision medicine. Trends in Genetics, 36(5), 318-336.
  4. Zhang, Z., Li, S., & Han, L. (2020). Resolving Spliceosomal Malfunctions Advances RNA-Based Therapeutics. Trends in Molecular Medicine, 26(2), 135-137.
  5. Zhang, Z., Ruan, H., Liu, C. J., Ye, Y., Gong, J., Diao, L., … & Han, L. (2020). tRic: a user-friendly data portal to explore the expression landscape of tRNAs in human cancers. RNA biology, 17(11), 1674-1679.
  6. Hong, W., Ruan, H., Zhang, Z., Ye, Y., Liu, Y., Li, S., … & Han, L. (2020). APAatlas: decoding alternative polyadenylation across human tissues. Nucleic acids research, 48(D1), D34-D39.

Before 2020

  1. Zhang, Z., Lee, J. H., Ruan, H., Ye, Y., Krakowiak, J., Hu, Q., … & Han, L. (2019). Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer. Nature communications, 10(1), 4562.
  2. Zhang, Z., Ye, Y., Gong, J., Ruan, H., Liu, C. J., Xiang, Y., … & Han, L. (2018). Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers. Communications Biology, 1(1), 234.

corresponding author