Zhang Lab

Zhang Lab

Fudan University

Publications

2024

  1. Qian, S., Zhang, C., Tang, Y., Dai, M., He, Z., Ma, H., Wang, L., Yang, Q., Liu, Y., Xu, W., Zhang, Z.,#, Tang., QQ#. A single-cell sequence analysis of mouse subcutaneous white adipose tissue reveals dynamic changes during weaning. Commun Biol. (2024).7, 787
  2. Zhang, Z., Liu, G., Zhou, Z., Su, Z., Gu, X., Global level of methylation in the sea lamprey (jawless vertebrate) genome is intermediate between invertebrate and jawed vertebrate genomes. JEZ-B: Molecular and Developmental Evolution. (2024) https://doi.org/10.1002/jez.b.23250

2023

  1. Zhang, Z.#, Gao, Q., Ren, X., Luo, M., Liu, Y., Liu, P., … & Han, L#. (2023). Characterization of intratumor microbiome in cancer immunotherapy[J]. The Innovation, 4(5).
  2. Wang, Y., Hong, Q., Xia, Y., Zhang, Z.#, & Wen, B. (2023). The Lysine Demethylase KDM7A Regulates Immediate Early Genes in Neurons. Advanced Science, 10(28), 2301367.
  3. Dong, Y., Gao, Q., Chen, Y., Zhang, Z., Du, Y., Liu, Y., … & Ye, Y. (2023). Identification of CircRNA signature associated with tumor immune infiltration to predict therapeutic efficacy of immunotherapy. *Nature Communications, 14(1), 2540.

2022

  1. Wang, Y., Zhang, C., Wang, Y., Liu, X., & Zhang, Z#. (2022). Enhancer RNA (eRNA) in Human Diseases. International Journal of Molecular Sciences, 23(19), 11582.
  2. Zhang, Z.#, Luo, M., Li, Q., Liu, Y., Lussier, C., Zhang, J., … & Han, L. (2022). Genetic, pharmacogenomic, and immune landscapes of enhancer RNAs across human cancers. Cancer Research, 82(5), 785-790.
  3. Jin, W., Jiang, G., Yang, Y., Yang, J., Yang, W., Wang, D., … Zhang, Z.# & Gong, J. (2022). Animal-eRNAdb: a comprehensive animal enhancer RNA database. Nucleic Acids Research, 50(D1), D46-D53.

2021

  1. Zhang, Z., & Han, L. (2021). Circular RNAs sequenced at last. Nature Biotechnology, 39(7), 811-812.
  2. Shao, K., Pu, W., Zhang, J., Guo, S., Qian, F., Glurich, I., … Zhang, Z.# & Ding, W. (2021). DNA hypermethylation contributes to colorectal cancer metastasis by regulating the binding of CEBPB and TFCP2 to the CPEB1 promoter. Clinical epigenetics, 13(1), 89.
  3. Zhang, Z.#, Zhang, J., Diao, L., & Han, L. (2021). Small non-coding RNAs in human cancer: Function, clinical utility, and characterization. Oncogene, 40(9), 1570-1577.
  4. Li, Y., Tan, Z., Zhang, Y., Zhang, Z., Hu, Q., Liang, K., … & Yang, L. (2021). A noncoding RNA modulator potentiates phenylalanine metabolism in mice. Science, 373(6555), 662-673.
  5. Zhang, Z.#, Hong, W., Ruan, H., Jing, Y., Li, S., Liu, Y., … & Han, L. (2021). HeRA: An atlas of enhancer RNAs across human tissues. Nucleic acids research, 49(D1), D932-D938.
  6. Shen, S., Zhang, Z., & He, F. (2021). The phylogenetic relationship within SARS-CoV-2s: An expanding basal clade. Molecular Phylogenetics and Evolution, 157, 107017.

2020

  1. Zhang, Z., Jing, J., Ye, Y., Chen, Z., Jing, Y., Li, S., … & Han, L. (2020). Characterization of the dual functional effects of heat shock proteins (HSPs) in cancer hallmarks to aid development of HSP inhibitors. Genome medicine, 12, 1-16.
  2. Li, S., Zhang, Z., & Han, L. (2020). 3D spheroids propel tumor characterization. Trends in Cancer, 6(8), 622-624.
  3. Ye, Y., Zhang, Z., Liu, Y., Diao, L., & Han, L. (2020). A multi-omics perspective of quantitative trait loci in precision medicine. Trends in Genetics, 36(5), 318-336.
  4. Zhang, Z., Li, S., & Han, L. (2020). Resolving Spliceosomal Malfunctions Advances RNA-Based Therapeutics. Trends in Molecular Medicine, 26(2), 135-137.
  5. Zhang, Z., Ruan, H., Liu, C. J., Ye, Y., Gong, J., Diao, L., … & Han, L. (2020). tRic: a user-friendly data portal to explore the expression landscape of tRNAs in human cancers. RNA biology, 17(11), 1674-1679.
  6. Hong, W., Ruan, H., Zhang, Z., Ye, Y., Liu, Y., Li, S., … & Han, L. (2020). APAatlas: decoding alternative polyadenylation across human tissues. Nucleic acids research, 48(D1), D34-D39.

Before 2020

  1. Zhang, Z., Lee, J. H., Ruan, H., Ye, Y., Krakowiak, J., Hu, Q., … & Han, L. (2019). Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer. Nature communications, 10(1), 4562.
  2. Zhang, Z., Ye, Y., Gong, J., Ruan, H., Liu, C. J., Xiang, Y., … & Han, L. (2018). Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers. Communications Biology, 1(1), 234.

corresponding author